NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1047238

Scaffold Ga0208162_1047238


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1047238 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1464
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003805Metagenome / Metatranscriptome467Y
F006109Metagenome381Y
F017824Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_10472382F006109N/AMTRYVVMAGDRWVTAIYGPGKGIGVTSNREDASSWPNYERAVVAARAAADCTNSPVAVHSIEEPSYRKS
Ga0208162_10472383F017824N/AMNNAVMQWKEDFEKSQRLGEGRSRTSSEKSELFELMIWIGGQGAMRDLIRAESLQQAIQFAENRYPNCRVDVPPKAARKPKLARSHTSPSLVEKRRKKAAEGK
Ga0208162_10472385F003805N/AMRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLEKTKANWAIHEAADNLTDHYGLDRDSA

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