Scaffold Ga0208162_1033719

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1033719
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1846
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F063076	Metagenome / Metatranscriptome	130	Y
F098208	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10337193	F009521	AGG	MGLYKPVRGGLMKYQIIINNGTLKGWKAFRGPCLATMQDKFKRLELQGHKLKLIRGK
Ga0208162_10337194	F098208	AGG	MSNTYTIKDVLKIGNLLDDGTNFKCNKCNESGEMTYQVLPSKDFKHGFDYSCGHCGQWQLEKVTQ
Ga0208162_10337195	F063076	N/A	MRTLWTMAIRKGDTMIYINRKDDFKKVETVDQFDQGRKYAKEMLKEYRLSDPGAYYYISQRPCKDWQLEAVTQCQI
Ga0208162_10337198	F004603	N/A	MIFSININGNIIDWCYNLDCQDKQFHKTWIPKLSDIQIITKDLDGLTVSEVKKIILEDIQPDIKMVKEHNNKLARARRMGK