Scaffold Ga0208162_1006671

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1006671
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5198
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020350	Metagenome / Metatranscriptome	224	N
F026260	Metagenome	198	Y
F035748	Metagenome	171	N
F067533	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100667110	F020350	GGA	MNPSIGPIELLTLKTNNRLLKTKHHVTNNQVRATLEELSFVLEKAVDHKDVDRLDVYSIINCIRLMARTPSDVFESTH
Ga0208162_10066713	F035748	N/A	MEAQEVKLYAPEYAGMTVWAVADPKSGKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNVGVEDPNSPQSSRWCKHPLADEERRKAIKQKAWGNLDSMGSYKETDFTK
Ga0208162_10066716	F026260	N/A	MKKTFETASAVKILRDGIAKGYWTLEDLDNPTPGTQMTFADYRRYCVAQGYLGKQPVYRNLLRDAEDNQQDDFIL
Ga0208162_10066718	F067533	N/A	MKTKDFYFHISNTGVRDFVTAYSFVDAKARVWRQYPDDQDRIVWEDTTDPIPDEPCARLF