NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1005625

Scaffold Ga0208162_1005625


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1005625 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5775
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F008346Metagenome335Y
F012117Metagenome / Metatranscriptome283N
F059861Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100562511F012117N/AMDILGGMSNSNNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPATFKSGWGRYTRADGFEYHWDDKFGVVSSKPAEDYKRAFSAWVFPQGAQHAYLWQRFTYAETSAFNSLLATFWNQMDTSSDSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDSFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMINQNELTDDDIPF
Ga0208162_10056256F008346GAGGMPIKLKPSVKIRDRATGKITTEHYYLKCMTLKELNDYIESPSSKKKVIQKCKNEIIRREK
Ga0208162_10056257F059861N/AMSKFYQEDLPYGEVGEKFVLDIINRKHPMAYKMEGYFLEYDIMIPEIEKTVEVKRDKHSDRTGNVFIETYCNKIESGINASTADYWAYLTKSMLYWIKSFDLKICILENAIPEGKNYMIDGKIIDAYLIPVNTFKTYCMRIDTLTEEQLCQLN
Ga0208162_10056259F002221AGGMKTYIDETLESKLKELRTYENNTYVKWGNRKRILKIVGVKFEIKFCKAEQLLRESLQNDSAQKKLKMVEMMLRAYEQLNIKCEESGYAQIQPNARCFNFDNKTALICDTDADKPLLEKIHKDEDNIVIFSVEELLRCIPKDFMEAKVLLSKLDKSVNFKSINYV
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