Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1005504 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1005504 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5844
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5844

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F058519	Metagenome	135	N
F065123	Metagenome	128	Y
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10055041	F065123	AGGAG	MIERSLKDAIQQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFG
Ga0208162_100550412	F011253	AGG	MNNRKSEIDKIIKDMVKNKSLPYANAITKIKKDRKGYFQAKDIKQKQKSLSTDRFQQYLKDIAENDTE
Ga0208162_10055043	F058519	N/A	MANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIADKEIQDKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHIKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWVCSHPKIDQRAFTGDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEELQPENLKKNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV
Ga0208162_10055044	F092873	GAG	MNNILNKKFIEIASKSGYKTDFVERFMIKKELATKTFTFNRPSLEKLLKKNNKKISDFIKDTYLPKEQKNKFAQISKILNPKKNAPKYYTENDLAFDLSHWFNSFANGDILVSPEYFIGHTIEIPVVGSLYGNGQVGFHKGKEINKINIHPKYGNCHAIESKQGSSMGLMRLFIPNKNVDRNANHRFSILQDRKSKIIWLGYIEPQSNGKYNILDRSYSTGKIIGNLVENISLSWSSEIKALYYPNFYNS
Ga0208162_10055046	F008915	AGGAGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLVFKDLKLQVRTQIPKNNNSLIIRPKAKPDEFYILVIDEAPKFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN
Ga0208162_10055049	F004990	GAGG	LAEVDEYFDLKKPCCVCKKGADLREGNKYYCCDHYALYVLGKPMSQIEKELNNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1005504

Overview

Ecosystem & Geography

Associated Families

Sequences