Scaffold Ga0208162_1000992

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000992
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15334
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100099220	F010091	GAG	MNIDEMLEEAEKGKNSAIFKRITKEAEPFWLGCEERVLAGKTIKPYVVSRLLKEHFDVKISETAIRNHFANLLANNVE
Ga0208162_100099222	F040134	N/A	MTHNNVKSKWTLTSIEYSGLGDKPYFILSNEQGDVKLVPITRGVHNLKDLLDLEEE
Ga0208162_100099224	F022423	AGAAG	MQDLNFITQTVAEMTSRVESTETVNKIIGTANQYAQIKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQAEFETMSIQEKLSAAGIETVDITNGPQTPEGIVGEVVNQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNDPTICGGHTGKWRKSWWIDNSDIPEEWGI
Ga0208162_100099228	F025614	AGGAG	MASQKIDINKINIFNNPKFMKVWAKQFDQACGSDVFNVPPDMAKLRFLMDKFVVDYNFHLEQLEEE
Ga0208162_100099231	F014085	N/A	MNNLSQMREEALKRAGGRCEWAYCNDNKWLELAHIQGIGMGGSKSRKFDMNNVAILCKWHHDIYDGRQSSGHSKAYRDLLKGFLKREFND