Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1000314 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1000314 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28640
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (18.87%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28640

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (18.87%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F017473	Metagenome	240	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F082629	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100031422	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNGEHYVPKYGYVVGGIVPEKSCDMNNREDFRNWYNHFHLQAEVELERELAVIIGTWIEDSKIVFDLCNVLDDEQEALALAKKRGERAIYDLENKKEIFVK
Ga0208162_100031425	F025729	N/A	MNKEILDRLVYCEETYAGESETWKDPVTGDYYYVPIEIVRDWDNAMNLNDPN
Ga0208162_100031426	F020115	N/A	MKPEQFEIFRQWADRVANTANDTDTHIRPIDIIHDIAGILSNDEHFLPRL
Ga0208162_100031429	F025275	N/A	MKQYALLHGVCGLAEGYSDTTVRWFSDLDKAMEAKQQSLALLSITEHEEIESSTDGMQDIITFSHDESEAEILKIIPVEYMWSDNPLIQPHICREYLVWNQMDCRAEWGGKYLLSDLGVIKDLCERLDAIAVAVGVEPLHEFVKDLRRYGNAMFDADDICIYYFEIPKSTKQ
Ga0208162_100031430	F017473	N/A	MTPQRKEEHIRNIAFCIQNGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDAFIEQNPDIND
Ga0208162_100031432	F008453	N/A	MTNYAVYRVFRDWNKKPQILHENLSREQAQNIVKNTPYEDESMVVFDKIK
Ga0208162_10003147	F082629	N/A	MEKSNRKKITQVDSQKDSQSNASGLIYWEDYNFDNQTDTAGYLKNDFNIIYDAPTGRNAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1000314

Overview

Ecosystem & Geography

Associated Families

Sequences