Scaffold Ga0208898_1022260

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1022260
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2768
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004520	Metagenome / Metatranscriptome	434	Y
F023317	Metagenome / Metatranscriptome	210	Y
F066793	Metagenome / Metatranscriptome	126	Y
F086293	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10222601	F066793	N/A	TQQCINHVLNYPGEANGVFMTLNKTQQDDVYELLNQIL
Ga0208898_10222602	F023317	N/A	MNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCHDEMVSNKKWLDPFWKQPDYISETDKNWNELLAKINNKNK
Ga0208898_10222604	F086293	AGTAG	MNKLIIAGMVASGLLGYNIKEDGTKVEQALENVQYIKSWVIEDLNSGVMDTIYAEYYINTLNETEELLITK
Ga0208898_10222607	F004520	N/A	MKLTNKEKDEITWRVVDSLYEKLANELEYELQEHENFPETNNEFMDLFNEMTIKIVKYMRSELFQPMTNEDLK