Scaffold Ga0208898_1009228

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1009228
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5042
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015852	Metagenome / Metatranscriptome	251	Y
F024767	Metagenome / Metatranscriptome	204	Y
F068776	Metagenome / Metatranscriptome	124	N
F071094	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100922810	F015852	GGAGG	MDWRGHLITVILAFILGVIVAWKGCESEPITKIVEKPIPQIQYVDRWKVDTVRFVRRELVTRYDTIYSEKIVTRLDTLLLIDTVSIVQTWLTEVANYDTTISDVRVKWSNYQNRTENLTVQYKRKEQKFSVGVHGLVGVQSDFIQNTKPMFGMGLHGSIKKTYLSANYGYNGQHFIGVGVGRTIISR
Ga0208898_10092284	F024767	N/A	MNHLQFELTMSNEQIPAFIRLVALKALNDLRNGGGTTHVEPFIFWQLIKHSGAEAVKSGLYTFVRVVNDNNFVDIQTLNS
Ga0208898_10092287	F071094	GGA	MIVFILTSILFLVLLVIGLLLYIGYKIRQFEDTQDVIFDAAVNAEEMYNEIQTNQEAILNAHFRQN
Ga0208898_10092289	F068776	GGA	MNYYYYQDAEVRKQIDELLQQNATIQANLGTDSTTEERAEAKRQWMELAKKINEIDPKFYRERIMAQHR