Scaffold Ga0208898_1008055

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1008055
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5538
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013882	Metagenome	267	Y
F039115	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10080557	F013882	AGAAGG	MVASSTVTVVGVKDAMRELQKIKPDLATRIKKDFKDIVKPVVGDARSQVVNLPLSGFSRNWKAGKLLPWSQSAVSRSIIARYSNRRRGNSLAVFSVTMKSPAGTIFDIAGRKSANRLGAALDSLYGRASRLMWPTYERHANQVNKNMADLVEKITDAANRRLLD
Ga0208898_10080559	F039115	N/A	YLATPTFGIGVNLAGIKDLTDQCKSVVITKSRESLDSTSFGNTGRQYVGGLTNVTVTATLLMEYSSTPGTYVDLTALVGTNVYVAVKPTGDAISATNPEFQITGGYLESLDVVNGSVGELSEVEITVTGGVLVEDTTP