Scaffold Ga0208898_1000300

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1000300
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39194
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (73.21%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054895	Metagenome / Metatranscriptome	139	N
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10003001	F054895	GGAGG	MAAISLTGNAIYSQNINNFSGELFRVGGQRTPFLSATGGLNGGKVLQSTFWQIQAADSHT
Ga0208898_10003003	F077364	AGGAG	MAQVVVIGPGGARTTANDTARPGESESELERLLSGKIPGREGFAGASVQGVRDETYAGDYGGYQPTASESNNGRTLSQGLDVAKGMMSFLPEAVLQEYAKAWVKTGDKDVAVGLTRQTKAWKDNFGKLMRDDGTLIMSEISFMGVKASYKQTLAEVGVTDFTDFEDEFTDMAVGYNTGDPVSAEEFQARIDLVYAGVKNQIPEVEKLFKERYNIPLDSGTVFAALINPKIQDKILEGDIATLQLQAQATSRGFTGTFQNFERLRKLGLGVDKAGELYRTAGAMMQQAKTIGRELDLSTLEDYAVGDITAAKRVQRIQSELASTQGVQLGAAKKDKQITGLIAD