Scaffold Ga0208904_1011876

Overview

Basic Information

• Taxon OID: 3300025669
• Scaffold ID: Ga0208904_1011876
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3934
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Kiritimatiellota → Kiritimatiellia → Kiritimatiellales → Pontiellaceae → Pontiella → Pontiella desulfatans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208904_10118766	F039448	AGAAG	MNTAKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKNHAFISNMYEDVQDVCDTLFAQYKTGVFTGDEIAYFLARVVAETSTDAFQFGGLTFGEGLAPADDGGINMIGITMIVHYGRSGF
Ga0208904_10118767	F098516	AGGAG	MTISKATSFGALTDHFAILETVHDAGTLADIMSLVASSKVRRAQSRADAQDENEDIAASAFTGNTAEEITEVSCTYALKSGTLDLSDLVIGELAVQIFAESLALTTANGGWPQITVTGYLGLETITAPSSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTSDFVRVSDAPAWELATVLTDSPFLAEVTQDPGEDQGQAAWHTAAGAAS