Scaffold Ga0209251_1026918

Overview

Basic Information

• Taxon OID: 3300025668
• Scaffold ID: Ga0209251_1026918
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2342
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037734	Metagenome	167	Y
F056035	Metagenome / Metatranscriptome	138	Y
F072342	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209251_102691810	F056035	N/A	LYKNPKEVKTTCEIKQEDGKIVIDFWADCGKFGTDEMLDGYILTPKRLLQILQDRDDYTDDEL
Ga0209251_10269184	F037734	GGAG	MIYRYVVNTISDKSGEIVCYETVRTYSEALRVVKRYAALNGLTNKIEENTNA
Ga0209251_10269187	F072342	GAGG	MPQDYHKIRIKKQLKTQKVLKQMTAEQRAAIEEIQVSVAQCIEMIKECNDLYMSDVAKLESSWHSLRWAFEVDAV