Scaffold Ga0208849_1000401

Overview

Basic Information

• Taxon OID: 3300025664
• Scaffold ID: Ga0208849_1000401
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40954
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023144	Metagenome / Metatranscriptome	211	Y
F098473	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208849_10004012	F098473	AGGA	MPPLPDDTYDVIVVDAEVDDDGELHLEVTVTLGPQIGRIVRLRKLQVETRRGVLDTADPFLLLGIPGTLSVRQGVPRFRPETV
Ga0208849_10004018	F023144	AGGGGG	VLICDGCLVLHRDGEIAYCSEELDGKTCAGYDMPHLAGVMACRITPRGTRCRHCDDVMRFRLMMAPDFVPDGERTVIN