Basic Information | |
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Taxon OID | 3300025653 Open in IMG/M |
Scaffold ID | Ga0208428_1002481 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7450 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008190 | Metagenome / Metatranscriptome | 337 | Y |
F029447 | Metagenome / Metatranscriptome | 188 | Y |
F042621 | Metagenome / Metatranscriptome | 158 | Y |
F059985 | Metagenome / Metatranscriptome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208428_10024812 | F042621 | AGGA | MDNLEKEQLQWIKGDKIGTVEVISGNDGEWTTFESGSRIATSLISEFLMPIDGEPLDFSPPNPALTKAAETYKEKVTTQPKVASPIRTLFDKQKKNDSVKLNLTFPIDVPKKAIYEIISTSFDLDEVNEELESYIKDQISEDLVKDSLFESIKQLIKSRYQAN |
Ga0208428_10024814 | F059985 | AGGAGG | MVKIVLEPARNGVIKRVIDDNHGGGKEQWTSTDVYEESDSDSNRYEYIMKFFFELCEDLGLECGNKFDKNVLQFDTVWGTHYEPNKKEVESKIRELQAEIDLLKEWKQA |
Ga0208428_10024815 | F008190 | N/A | METSIEFNFIYSKDAVRVKSFLGTVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTILDRSTTTSIFYVLGNLNERTVIGVKNYVETLTDRDIEYNIYHSPDINVNGTAELFKNVVEFE |
Ga0208428_10024818 | F029447 | N/A | MNIKSLALKNKLIEERTGEFYYDLTAPSFTYDADLGVKALHYVQIDQVGRIDKISELYFGSGEFIDAICVVNNIFNPFTIAEGDILVIPNLSRQDLVYSRPNPASRPNSTQEAYIDTGRQSEKDQGRMQRLIEKAKTSKAGVKQPMPPNMLQPGQETKQYEGGKIKLGTNLNSRNTKAN |
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