Scaffold Ga0208643_1038450

Overview

Basic Information

• Taxon OID: 3300025645
• Scaffold ID: Ga0208643_1038450
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1533
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F002151	Metagenome / Metatranscriptome	589	Y
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208643_10384501	F002151	N/A	MEYVNYAALVCSIVAFGLSLIACARVGKFLKATADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQEQIIQQMLEHQNVEQIRRGG
Ga0208643_10384502	F030418	AGGCGG	MGIFDSIGTVLSRVVPSAIGFATGGPIGAATSLIGVERAKKTQKNIERAQFMFQQDPGLSQGLSGVSTGRTSSGSGSFFGNLGQTIGGFGRSVGGFVEDIAPALGLFGVGQGLQRANSGTAISVDLGRPQETASSGEILGANLGLAAPLLQAGRNFLRTPGGQTALGFGGAALGAVFGGDGQAAPRITRKMKSDVRRIYMMAGMDPSLTAQILNNMGTYPRMNFDTSLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNNVCKPTTRRAPARRAAPKAVQLIKN
Ga0208643_10384503	F001416	AGGAG	MPLVKKRIFLTAGSTSDQVLAGTTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFSRNASVSALVTGEPF