Scaffold Ga0208643_1008673

Overview

Basic Information

• Taxon OID: 3300025645
• Scaffold ID: Ga0208643_1008673
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4047
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F045763	Metagenome / Metatranscriptome	152	Y
F085719	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208643_100867310	F045763	N/A	MSLFYWSEETISHFKFISSYLSKKQTVRKIELFVEMDCVPAEEETEDMLVQDLINVIYK
Ga0208643_100867311	F085719	AGAAGG	VKYLQELTFINQLMVMTKTYRNIEYTYMISETWNGIKYDNYHCNDRNLLDGLETSMFTKLSEQDMRDEIDHLIDQRQDLLQIHLVHEARRDWYSNTYSGEYTGD
Ga0208643_10086737	F001217	N/A	MSKTKFNGFEKYFIQTALSHAVQEAEADVLAAKSKGKRSLYGPGYFTMVGNEILDKVNNMTLKKYQD