NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209833_1160913

Scaffold Ga0209833_1160913


Overview

Basic Information
Taxon OID3300025641 Open in IMG/M
Scaffold IDGa0209833_1160913 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013482Metagenome / Metatranscriptome271Y
F016625Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209833_11609131F013482GGAGGMSDKELTIKSLKERKEEINEELEYKNVQSLSDELYEIEDTLKKLGVN
Ga0209833_11609133F016625N/AVLMTMTMAKSDEPINVKVKNYIVNEVNDIKEYQKTQWQKGKEQNANNWNKLKSLLGVK

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