Scaffold Ga0208198_1016549

Overview

Basic Information

• Taxon OID: 3300025638
• Scaffold ID: Ga0208198_1016549
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3418
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium ADurb.Bin238 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.65
  • Long. (^o): 135.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072352	Metagenome / Metatranscriptome	121	Y
F080011	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208198_10165497	F072352	GGGGG	MSSKTFRLPDLRRAPTVVRLPCCKNGCGEMLALDDGWQCPVCNWYRGYYRGERHP
Ga0208198_10165498	F080011	AGGAGG	MTWDELEELRDRLSYILERERAEDGFCPIEEDYYVLYRQAARRAVADIDPSHSRDRDHYRILQEIYDAVEEIYDIRSAKLRMAVQDRVVFRRDGERPENLTVEEQERYDMAISLGGHNAA