Scaffold Ga0208147_1001227

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1001227
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8433
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022860	Metagenome / Metatranscriptome	212	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100122711	F033780	GAGG	MTPCPWSLVAVHWIDAFDSTNGWINTKDYKPKPQHVMSVGWLWPDILEGYLSVTCSWCPEEEPEMDTVGMVTHIPVGMVQKVVVLGNPEL
Ga0208147_100122717	F078657	GGAG	MTDNQNIFYESWITDLQRDLDSLREDKRELLRKVAMLEQLVAEYGNKLSNLIQHRGDE
Ga0208147_100122718	F045719	AGGAG	MSTATWYKLKDESWGVKVRHDGQEGEQVSVVNKKGEEKTVFLAKRVAKFDDAQLWSVSDEAPAPRHKTLDEEPF
Ga0208147_10012274	F022860	AGGA	MKKFLSYVADQTWTLAGTGLVLITLSGPTLRQALLLTGVALVLHSVLTLTGGKDD