NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208147_1000116

Scaffold Ga0208147_1000116


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1000116 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31613
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.18%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F000847Metagenome / Metatranscriptome861N
F002356Metagenome / Metatranscriptome567N
F003267Metagenome / Metatranscriptome496N
F003459Metagenome485N
F006105Metagenome / Metatranscriptome381Y
F006621Metagenome / Metatranscriptome368Y
F007748Metagenome / Metatranscriptome345N
F012449Metagenome / Metatranscriptome280Y
F024098Metagenome207Y
F088549Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208147_100011613F002356N/AMNLKAAIDTLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHEVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEITEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAAQNFAAIAQSIQTLKNSK
Ga0208147_100011617F024098N/AMAISVLSGSPQSATPVFNKMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGTYFPPAPLTANTGKSLTTTQDGTSVSNAIAVVYADSYGYLCYGKGSANTTNAVRVRYRDASNAVTREFFVSEGAASGSTIVRFGSGPMNLNALTSAQCSDGLAGSASFPITEGAGYSIEPIDTLNTGLPYYPVYYRLGPCQRFDSVPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0208147_100011620F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPALGYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0208147_100011623F003267N/AMKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPEQRKLVKEILENSLVAAKVKVVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMIFFNIVAWERAIAELEKADAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF
Ga0208147_100011628F006621GAGLANSTKVDPEAQVQARMDSLMMVITTLCDCIGAVEESNAPNAFAVKMKIVDKIDELIDKIEY
Ga0208147_100011631F012449AGGMDTLIFPLLISSLTALAIAEYHVLPQWWYRTWLARNKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQLTNR
Ga0208147_100011645F003459N/AMNHLVTIPKSDISKQDIADIAAGLIHRIEEGEVNPIAAHVRLKAVVKALEQVLKSTEDIVRDEAEKHGKTFSAFGSEIQIKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKATVYDEATGEVVPVCPAKGTKPSIAVTFKTT
Ga0208147_10001165F000847N/AMSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQIPYSHSVCEIPT
Ga0208147_100011653F007748N/AVNLIETTIIGTVSAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIESLENTIQQLEAENANLKSLQ
Ga0208147_100011655F088549N/AADFRTIYDAEASQNTCVELGRINPDNPKAFCVDILWEGEEPSHWVRHQVWPKPCGVHSFLGWDAQYEADYQEFATPQSK
Ga0208147_10001169F006105AGGMIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSNYTERYDKFSLTVGQVETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTFANSIQYNVYGASAVSIFDSTFDQTFQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.