Scaffold Ga0208147_1000019

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000019
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46562
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (46.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F011216	Metagenome / Metatranscriptome	293	Y
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100001922	F012111	AGG	MSERAPRRYTDGTVTFEGGIDMGVMPSEIDKNQVSFAINSSFREGFVSPRPGFVQKDYDVCLTITADNAIVTADAINVTADGWSEECYGPDEIGGVFQCALPYIADNGRTYILALISGEVWLYDTQLNTFINLSVTDDLKNPSNLLDGWMVQAENFVVIQDGFSKPLIFNGANLRRAQPDEIKCGRVMSYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITSMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDAWKNLNYPIQAISLLTSGALGARSSITVNGDVFYRAVDGIRSFIIARRSFSDWGNTPVSNEMLKIVENDQTDLLWSGSAVVFDNRLLMTTQPVYDNDGVYHRALGVLDFDLITSMRKKFAPAWAGIWTGLKVLQIVKTENPYGDQCWIFARGENGNIQLWELTKTGRFDVNLSEQKEIQWLFQTRAYNFEVPFGMKRLDSGDIFIDQLEGDVTFEARYKPDQYPGWIEWHDWAECARINLCGFQMDCLPITNYQPQYRPKMRLPTPSDTPCNSTISTPARNLFEVQMQLLVTGYCRIKSIRVHAYDVQEPVVGDCRTFSPACSILESCDQNPFFYSSE
Ga0208147_100001924	F005740	GAG	MKLIVSDIQAMIARVIGTCTDDSRVYEYINQACRRLLHKGLWAGAYGRFTIFTNNGCITWPRQIETIEAVADCCAVGTVRNQWFEFQETGFGLVNGGGQVCLGNQLLDRGTVVSYRDLSGGTNNYLRVYPGDPSDVGKTITLQGTDNNGQWIRTQSGGVWIDGEKVTLALPYVQTTKKFTTLTGVIRQATNTVSRVYEYDATTLAETDIAVYDPDETLPQYRRSYLGNRCNANEDKPVTVMAKMRHINASTPNDYLIPPCADAIKLMVQAIRKEENDLLNEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGAGQNGGGLYQWF
Ga0208147_100001944	F011216	GGAGG	VSKTPRTDRQPYVTVAFQQYVKIGFAKQLERQLAGANKRIKELEAKADELNDLKKWMVGR
Ga0208147_100001971	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFNTTSIEPTAAEEWSAITLATGENGGACDVTYADVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQATSELTQEMLDVTAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPQFRDDLRYADMGSGTGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWVSAPYEAAFVVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLNVDCADPLEKKGQHYAEFIHAAEPIFTNQGMTIIFRRCTGALTTIICS
Ga0208147_100001972	F038648	GAG	MPKFMLPEGVEIPENLAEGEAFQTMATIVLGKGGKAELIEVDGVAIPGYEKAAKNKKMKGGEEEMEEEGEMESKGGGGRESFIAEVMRRGQGPMMS
Ga0208147_100001974	F029798	N/A	MANISCTDAASLIAEAWGASCKSPRERNLLEIGLLWEAATLGGSADITADSTVVTADSTIITADMTEFI
Ga0208147_10000198	F015354	AGG	MNPNIASLIRHILTAAGGFLVAKGLASADQVGEFAGAIATIVGIGWSIKKNAGGEKKAE