NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1000001

Scaffold Ga0208147_1000001


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1000001 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)125635
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (71.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017466Metagenome / Metatranscriptome240Y
F021943Metagenome216Y
F088890Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208147_1000001107F088890N/AMLGAHKLVVDEWAEVWDLLRPWADASFWQLPELDPANIYIVGRVLLKENWKTITDWATQYPGRVIFSNPAEGSETILLQLQRL
Ga0208147_100000124F021943N/AMKTALDTELFPDLCEVVFLPLHRQWVYLIQKNGNSSLRSQQARDNLAVFSNHEILALDYVDVYIRNPRDRYVSGINTYLQHLQRDHPELDYSTAFWFAKRYKFLNTHYLPQFHWLANLARYLRHDTKIRFRNFKDFGAITDFESRAEVIPPSKDFVTELFKDNHGIELWLYLDQILLELVDQEFTWIELLDHYQKNYKNIIEHVLPKA
Ga0208147_100000135F017466AGGAMRAREFVSEAKYGNASDVPANVHKLPKSQASALKGIISMPDISQNKQGGSPYTQWRFGIAMAGAPDYETDPAGAFAGDPIIGTYTDVELEIANAAAKSVGAGRVSKLTDNRSTEADWVQKTSPIKGFKGYSK

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