Scaffold Ga0208147_1000001

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000001
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125635
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (71.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017466	Metagenome / Metatranscriptome	240	Y
F021943	Metagenome	216	Y
F088890	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_1000001107	F088890	N/A	MLGAHKLVVDEWAEVWDLLRPWADASFWQLPELDPANIYIVGRVLLKENWKTITDWATQYPGRVIFSNPAEGSETILLQLQRL
Ga0208147_100000124	F021943	N/A	MKTALDTELFPDLCEVVFLPLHRQWVYLIQKNGNSSLRSQQARDNLAVFSNHEILALDYVDVYIRNPRDRYVSGINTYLQHLQRDHPELDYSTAFWFAKRYKFLNTHYLPQFHWLANLARYLRHDTKIRFRNFKDFGAITDFESRAEVIPPSKDFVTELFKDNHGIELWLYLDQILLELVDQEFTWIELLDHYQKNYKNIIEHVLPKA
Ga0208147_100000135	F017466	AGGA	MRAREFVSEAKYGNASDVPANVHKLPKSQASALKGIISMPDISQNKQGGSPYTQWRFGIAMAGAPDYETDPAGAFAGDPIIGTYTDVELEIANAAAKSVGAGRVSKLTDNRSTEADWVQKTSPIKGFKGYSK