Scaffold Ga0209194_1026803

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1026803
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F010573	Metagenome	302	Y
F068594	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10268033	F010573	GAG	MSGFVQDWDCTQCKNGKGFQETFKDTEEGYILECLNCKYMEVYREDVDTGKVVEDYAGYEHYYNNKQARG
Ga0209194_10268035	F068594	GAGG	MKKYTFWQEVKKYVREECTIKANSLDEALEIHNDGGADYKEVHCFDEEITDEGTGEKI
Ga0209194_10268036	F005611	N/A	MREQVKKYKVRAEETIYAIYETEIEAKNEKQARKIALDTCASDYLSSDWSNSAGDFTIEDIEEIEE