Scaffold Ga0209194_1008993

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1008993
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4048
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F013295	Metagenome	272	N
F088712	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_100899310	F013295	GAGG	MKINNLTPKQFARREIIKYLRDLFDNPQKYIQDFDSYTHRQQEEILRFVSLDEHRIDKLLNLPMGES
Ga0209194_100899313	F004343	GAGG	MTQHREMIEEAKRLLNSERENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKKDVIIQES
Ga0209194_10089935	F088712	AGGGGG	MYIPIETKETYNGNQYIMQAGLVKGRNHLLRNGWEYCANGTSLTNGRNTGSYNRFMKCWSFDNDIINVRDHCTYLNEQSLTMQSLRGK