Scaffold Ga0208004_1034628

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1034628
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1451
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10346282	F032639	N/A	MKKELINEDGFYAGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTVAYMIDEGQLNTDEQ
Ga0208004_10346283	F020115	GAG	MTHKQFLIFRDWAERVANTANDTDTNIRSIDLIHDIAGILSNDEHFLPRL
Ga0208004_10346284	F025729	N/A	MNEKIKSRLVYVEETYAGESETWQDPITGDYYYVPIEIVRDWDNAMNLNDEN
Ga0208004_10346286	F018534	N/A	MVAGITLTTFLDKWDKLIVTGMTPERSDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKAQGLDVSRRLDVSRAVDDFLE