NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208004_1018313

Scaffold Ga0208004_1018313


Overview

Basic Information
Taxon OID3300025630 Open in IMG/M
Scaffold IDGa0208004_1018313 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F021100Metagenome220Y
F038218Metagenome166N
F093801Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208004_10183131F001873GAGGMRWWNIAAALAVLAGGADAGVILMSTDYTAGGTFTAAATDGKGDLIQFDLTGTGGGGAVWLNADGFGNNHLERQYESGGYRYGIKRIPGAVPDDISEFVTVDWIQHHQGGAVEFGGNDSRGMVEMFAESDEVLDSGYLQITLRNDWEYALWKLNGELLYEHTEGQSSLKTFRYDLPNGLEGLRFDFSGSGTADGVIERIEFHEYGTTVPEPSLGDLIDLIGSGIGGLIGW
Ga0208004_10183133F021100AGGMNDEQRIAQAAMTIAGCIFEDADQSTLVAKLRHCCEWRNQGTGSDLTRSDRDGLRLLLDAATGLSSNLCDSETGAVIRTPTVEEVCESAVAGPEGHIMVDGVRCYVEL
Ga0208004_10183134F038218AGGMNTELLNAIQNMLINFANENAISLADEFGTREKFSQFVFSFSIKSLVDICGLDTKTAYDFVMGDGAFAKLADECWQQLNAVAA
Ga0208004_10183135F093801AGGGGGMFQYPTENTTAPVCPYCQASHPEPEDLDESEAHCIECDDCGKLYAAVCDYQGWKTRCGGSHKWHALNGVRVCSRCGADG
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