Scaffold Ga0208004

Basic Information
Taxon OID	3300025630 Open in IMG/M
Scaffold ID	Ga0208004_1006005 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4284
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018534	Metagenome / Metatranscriptome	234	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N
F062175	Metagenome	131	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

234

Metagenome / Metatranscriptome

193

Metagenome / Metatranscriptome

193

Metagenome

131

Protein ID	Family	RBS	Sequence
Ga0208004_10060051	F062175	N/A	MMTDKEAQAFMQKVDATAPFWVELHDEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGL
Ga0208004_10060054	F018534	N/A	MALPTLTDFLNSWDKLIVTGMTPERSDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0208004_10060057	F027835	N/A	MKTQRQIDALYERMKTSGGFECALIMAYMKADGGNARLLEDAFRGTRFDLLPKPRFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDEQPIDQHFLTRLQ
Ga0208004_10060058	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNREYYVPKYGYVVGGIVPEKSCKMDNESAFKHTYNRFFYQAELALERESAVVIGTWVEDGQIVFDLCNILDDMKDALELAAKRGERAIYDLEEQREIFVNYK

Protein ID

Family

RBS

Sequence

Ga0208004_10060051

N/A

MMTDKEAQAFMQKVDATAPFWVELHDEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGL

Ga0208004_10060054

N/A

MALPTLTDFLNSWDKLIVTGMTPERSDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE

Ga0208004_10060057

N/A

MKTQRQIDALYERMKTSGGFECALIMAYMKADGGNARLLEDAFRGTRFDLLPKPRFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDEQPIDQHFLTRLQ

Ga0208004_10060058

N/A

MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNREYYVPKYGYVVGGIVPEKSCKMDNESAFKHTYNRFFYQAELALERESAVVIGTWVEDGQIVFDLCNILDDMKDALELAAKRGERAIYDLEEQREIFVNYK

NMPFamsDB