Scaffold Ga0208004_1003059

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1003059
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6216
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025493	Metagenome / Metatranscriptome	201	N
F027498	Metagenome / Metatranscriptome	194	N
F039607	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_100305910	F027498	GGAGG	MFNQGQTKMPAKGDIKQVEGCTDYLEFNGKRWHRFHENGEDAGIGVWGEKDEVGSPAPRWFLRPRARRS
Ga0208004_10030594	F039607	N/A	MDLTSEFSALQTNVDRKMKIYADQCIENAIKALLMDNPSLYKQDMYKTMAKYQCMYTCCHLDQREKKCSTPAVLRGYCEKHAVPTVYEQMTNNTRRTSLPNRVMPSFGS
Ga0208004_10030598	F025493	GAG	MVTTARYTQTELRHAMETLDDEVFYAVYRWIMENENNFEMMGVEMLGMTNSQSIGIATEVIDALLKFSQHTCQEEIKDYTASLVCFTDSAVYALLVNVDKERFGARRFAKFVYTTLMNALKRDLLENLYVLI