Scaffold Ga0208220_1000004

Overview

Basic Information

• Taxon OID: 3300025627
• Scaffold ID: Ga0208220_1000004
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 378668
• Total Scaffold Genes: 398
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 241 (60.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058535	Metagenome / Metatranscriptome	135	Y
F071789	Metagenome	122	Y
F094576	Metagenome / Metatranscriptome	106	Y
F101529	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208220_1000004113	F071789	N/A	MADSSSSNVLLSFDYSDNSAPASVTNGSFNVIVDVLPGATTGLVRMFAVAPASTNASNIVCRFQWVNQSQAECAFNFPDNGVWTIHAQYEVVPQTDVVDVAVTNLRVLN
Ga0208220_1000004133	F058535	AGGA	MGYGCDMRYEYTELYIPVGKKGWRELGAALVDLPAEGWELFMAVPIIGLTSILPGISGSRTTAIIHYFRRPID
Ga0208220_100000434	F101529	N/A	MITFSDDRGVAVAAIDAVGAGRGWCNVSPDVEEEVPDMKVNYFGLRLNKGVTVASFVTAPPRRGVAQPSTLGVLHSRSRLGRERIATMLGGAPFVTRQDHNTRGLLFEVPLDTSAEEVLTVMCSLTETLCDYDFAGKWTMSQFLS
Ga0208220_100000492	F094576	N/A	MANSQRHRQATTERHEVREQSATRRELEASIRALLPSKEEIDDLTPSKSSTASIVGVGGIMSGYVWGRYRGRQVRKRRDS