NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1170433

Scaffold Ga0209716_1170433


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1170433 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043415Metagenome / Metatranscriptome156Y
F081914Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_11704331F043415N/AIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAIIKSSDVPYISQEDRLVVDAITTDKGNVLKPQTAFTVRTVEPDNTGLVSLVLEEE
Ga0209716_11704332F081914GAGGMSQFRLETELDMAGYLDINFGHGVSAVYTNNGTSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDIPNIAFGNRLDVSAIKDTNGNILK

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