Scaffold Ga0209716_1012968

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1012968
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3693
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036783	Metagenome / Metatranscriptome	169	N
F053299	Metagenome / Metatranscriptome	141	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_101296813	F053299	GGAG	MNNYKPYYRTDKMKQEELRAAKYVSILFFTMVAFSFIGFAFVLVKAMLYMTGLFL
Ga0209716_10129683	F036783	AGG	MEIVRQKYASHVDTRVYLDLGYGEMEVDVEDIEMIDGELSGMAYCHQREIEMYVDHKDCQRALDKYEEENNNE
Ga0209716_10129686	F086976	GAGG	MSGDKIPPIDPVTGQFVRPLSGNEVYKTRKEVVDANLSGEINTERFYELLGVYMEAEDEAPEYGFVGVGCISFAEAMLQEYQDGVVRRIKIPTLYDEYSFKQESNDE