Scaffold Ga0209716_1004592

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1004592
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7827
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F029449	Metagenome / Metatranscriptome	188	N
F095562	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100459211	F095562	N/A	MEQTDDPNILRNQVDKIEKEVNQLEKAKEEIQNECKHKGETFVQFDKSNSMKKYCSECKRELGYPTKAEQENFLGKKQ
Ga0209716_100459214	F002033	N/A	MSKFNKFFADHGIKIVLALMLLTYFKSCSIDSEVERIKKEQRILTTEIDTLSTQIVNEEEMIYLIKTIPAWKTLRIEEISDKERISINALEEKED
Ga0209716_100459215	F029449	AGAAG	VAGRVPIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIVQGTSACIDIQLFGSNDQPLNLDNICDIHVQLTNELDCVVANFWWPNIPSGSKGFLIDILQFTDTSGIIHNEGLIRICLPSSCTNTSPGNISAEILLTECGGGNTGDPTGVGPTGALP