Scaffold Ga0209716_1003700

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1003700
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9170
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008722	Metagenome	329	Y
F028861	Metagenome	190	Y
F070559	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100370021	F070559	GGA	MNKMMIVLLSLIMTTSAFAHEDPKTKLVFGKKCTVNNNIVISSYVWVVEKKSDWQKEINKKNCKELKND
Ga0209716_10037007	F008722	AGAAGG	MKIQEAIQRVLKAVEYYDMVHDTGNEKQNEKNKNYVWKGYDQLIKICNKKQKENEEV
Ga0209716_10037009	F028861	GGA	MADRVIYKLTEYNSSTGEHKVWYSNLRENLENQFPTVSEDQEITEINFDANDMKSLCNALNNSDIIED