Scaffold Ga0209716_1001839

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1001839
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14920
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051049	Metagenome / Metatranscriptome	144	Y
F071304	Metagenome / Metatranscriptome	122	Y
F080527	Metagenome / Metatranscriptome	115	Y
F081068	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_10018391	F081068	N/A	MKVKEIKTHDKILSMTDDFIQSNRKDGEIYSHYHYDMMAD
Ga0209716_100183916	F080527	N/A	MKKPIVIYYLHYYDEDHRERAFNKFQDFTICVMAENNAEAIEKAKLISGNDNIKIMGISTGKEEWVNEQSPMGTGEEIMPLGGWERNKYGK
Ga0209716_100183931	F071304	GAG	MKKLKSKLLTYLFTDWVKTEEDVETLIMTRNMIEQRKNKIVGHTPVMGFRSHLNNNL
Ga0209716_100183933	F051049	N/A	MTVEQRLSNLETSYIKWSEKENGTGYDAGYVWWEREKDCQEWCNKEKTYVPMSTTKTLVTMRSWVKRQKSFS