NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209041_1003752

Scaffold Ga0209041_1003752


Overview

Basic Information
Taxon OID3300025623 Open in IMG/M
Scaffold IDGa0209041_1003752 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7615
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004282Metagenome / Metatranscriptome445Y
F005195Metagenome409Y
F103274Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209041_10037521F103274AGGAGGMADIQEKNPEVEIDTTGVNEQTIEVDAPKVSDEAFEKKQEVDLGYVDVSGGGKT
Ga0209041_100375212F005195N/AKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMIKLNPINRLKPIELGVNKGAQEAFDVAAKNARNTVRDLQVKYKDNMTLKQSLDDLQYYLKADEGVPSKSALRDLNESLKSFTNSGLVPVDEKKALNKVIGEINNKVGPMQATKTRYGTESNYTLQGGKDYRETIFTLPEDITTNASLRNKGGHFGDEIGDVNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSMTKAAQLSGERRLNPFNAEIELNLLVGQRGKMLKDLDDALARNEFGRVNAISASMKDINTKLKRLTTQRNTYSDTNKDYFPMVESDSYGDHAVKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVLPDVMGKNARFYGSSAGPTKISLSDPTKPYKTIGNDTFKYPKDHPLKGKEIKSQYHSSTGMNPEKGTKNIPEGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN
Ga0209041_10037527F004282AGGAGMWKWIKNLFKPKRVLPDITSVKPKVDLTGLTKGDIKKLKKQGKI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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