NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1086242

Scaffold Ga0209504_1086242


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1086242 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)851
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022883Metagenome / Metatranscriptome212Y
F053882Metagenome140Y
F101148Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10862421F101148GAGMIKISITTALKIIRSNKDFIFYRLEGSKMVDFTLTNDISRFRSQYNNNFKIISDIKKQINNNLKIEL
Ga0209504_10862422F053882N/AMQNLKFKTVTIYVTGANGEAFEYHKNNEYKNTTKEDVINIFKLEPLHYATNLEDVNLGKSFNTYNWGAPFTLCGVASEDVYDGVALVNIHLGGDARGNYSEPYLCDEPESIFSQSTFLDVELSNGEVFSFGCDNGEAYFDFDTLDPYYIDFDKNITKGQLEELNEKNEQ
Ga0209504_10862423F022883N/ADWYINRQLDILEKQIALEITTTEINQVTELNNFINK

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