Scaffold Ga0209504_1086242

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1086242
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 851
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022883	Metagenome / Metatranscriptome	212	Y
F053882	Metagenome	140	Y
F101148	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_10862421	F101148	GAG	MIKISITTALKIIRSNKDFIFYRLEGSKMVDFTLTNDISRFRSQYNNNFKIISDIKKQINNNLKIEL
Ga0209504_10862422	F053882	N/A	MQNLKFKTVTIYVTGANGEAFEYHKNNEYKNTTKEDVINIFKLEPLHYATNLEDVNLGKSFNTYNWGAPFTLCGVASEDVYDGVALVNIHLGGDARGNYSEPYLCDEPESIFSQSTFLDVELSNGEVFSFGCDNGEAYFDFDTLDPYYIDFDKNITKGQLEELNEKNEQ
Ga0209504_10862423	F022883	N/A	DWYINRQLDILEKQIALEITTTEINQVTELNNFINK