NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1011787

Scaffold Ga0209504_1011787


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1011787 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3880
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008882Metagenome / Metatranscriptome326N
F054415Metagenome / Metatranscriptome140N
F055270Metagenome / Metatranscriptome139Y
F088712Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_101178711F088712AGGMYIPLETQETYNGGNQHIMKAGLVKGRNYLLRNGWEYCANGTSLTNGRNTGSYNRFMKCWSFDNDIINVRDHCTYLNEQSLTINSLRGKL
Ga0209504_10117875F054415AGGAGMTEHTNQVEQQRERLKAEALDNQVTALEIRAGRIQTWYESGRVVTEYPRDKRKKTITDHRGIK
Ga0209504_10117877F008882GAGGMSVTQYNFKKPKINRQELELLNWFLAHTNDNPLINAEALDLFKANGYSAMNYQDLVNKIKTILKTYKTKGGI
Ga0209504_10117879F055270AGGTGGMELLHNREFKYYDKNADSVDMVNYIKTIMARNFIEEIYSLCLDYPKQFNQALSEIEYLYSKKLNAFVYPPKDYIQYKQGQELLREVA

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