Basic Information | |
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Taxon OID | 3300025621 Open in IMG/M |
Scaffold ID | Ga0209504_1011787 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3880 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008882 | Metagenome / Metatranscriptome | 326 | N |
F054415 | Metagenome / Metatranscriptome | 140 | N |
F055270 | Metagenome / Metatranscriptome | 139 | Y |
F088712 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209504_101178711 | F088712 | AGG | MYIPLETQETYNGGNQHIMKAGLVKGRNYLLRNGWEYCANGTSLTNGRNTGSYNRFMKCWSFDNDIINVRDHCTYLNEQSLTINSLRGKL |
Ga0209504_10117875 | F054415 | AGGAG | MTEHTNQVEQQRERLKAEALDNQVTALEIRAGRIQTWYESGRVVTEYPRDKRKKTITDHRGIK |
Ga0209504_10117877 | F008882 | GAGG | MSVTQYNFKKPKINRQELELLNWFLAHTNDNPLINAEALDLFKANGYSAMNYQDLVNKIKTILKTYKTKGGI |
Ga0209504_10117879 | F055270 | AGGTGG | MELLHNREFKYYDKNADSVDMVNYIKTIMARNFIEEIYSLCLDYPKQFNQALSEIEYLYSKKLNAFVYPPKDYIQYKQGQELLREVA |
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