Scaffold Ga0209405_1002096

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1002096
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13416
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (96.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F059965	Metagenome / Metatranscriptome	133	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100209614	F030435	AGG	MMDNQEILDMCRRLASKYYNHQDYDDIVSEGVVLCLNMRAEGIIEPHKMYYRARDEMSNYLNVRSSNLSYPKSRAGRKAVKDDNIEYVDAEEEQIPAEDLFGSYELKNSIEVLKKELSPKEWKLFIVLYNNNNNLTEASKVLNVSRQAVEQIRNNIRDKLVTICDLALL
Ga0209405_100209617	F059965	GAGG	MSLPPSMEMELMNLGLIRSDLEELNSIAKQTGFYALRAETKAWHDTLILDGKVMF
Ga0209405_100209619	F006939	GGAGG	MTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGRIAAEALRKAGYITLKTKQGYKCFNVDSVLGFVAGGRRIFGLGNEV
Ga0209405_100209622	F086976	AGGAG	MSGDKIPDLDSSGKFVTPVSGNEVYKTEIELTRALLDNEIPHELYVELIEVYHVAYEDATEYGFVGVGRISFAESMLQEHQDGVVRRIRIPTLYTDEDFNKENNNE