Scaffold Ga0208693_1061374

Overview

Basic Information

• Taxon OID: 3300025618
• Scaffold ID: Ga0208693_1061374
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F045597	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208693_10613742	F014003	AGGAGG	MKVVFNKAKVKSWIKKAHKHHSFGYGHGYITDGYVMLVDEPHMHPTILEVCGTLTPECRYTAEQFERMAKLPDTAIEVIDSRLEFVLEPKRRLRIFYDPKTGEKLTIDSAYFDLLDNPEEHRFYANTLKSTMWIVHNDKTVGVIAPFKLQEQLSHISFKTEGGDSAV
Ga0208693_10613743	F045597	AGGAGG	MRFDAHVAKPPMLISDSLGHGSRRTYVAAARVSRSSGGFMDVVAIYSRGYCDQHGEVESLDGLLGLLVVSASVSFTQITLAQFPEDLPRGWEAAWEAVEEAVLVLPE