Scaffold Ga0208693_1030459

Overview

Basic Information

• Taxon OID: 3300025618
• Scaffold ID: Ga0208693_1030459
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F095115	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208693_10304594	F095115	AGGAGG	MIRTMRKALEYATGKSENPTEIKERVEEYFAKTGGDRRLKFKWKAFAGNSKYTFSGIFEYAGQRYYFHKTGSEIELEYNNR
Ga0208693_10304595	F014634	AGGAGG	MEEKLKEIFNLEWIKEFAEKNIESTEWIEEDGEETRRILVIDTLFDGGHGVYIPGMVLDLFGQAEGYDLEDPYNPEKNETIYDALASLEDEVNHYLNKLLPSKGYYYVGYHEADGSYCLFYEEEVK