Basic Information | |
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Taxon OID | 3300025618 Open in IMG/M |
Scaffold ID | Ga0208693_1004948 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7724 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 37.8 | Long. (o) | -122.27 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F099240 | Metagenome / Metatranscriptome | 103 | N |
F101424 | Metagenome / Metatranscriptome | 102 | Y |
F105431 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208693_10049481 | F099240 | AGG | MKLLFNYSDFHKFPLNVCFSTLRLLLIDNFDGVYKDTNGKLIAVFDYHETEREQRIIRSASSFLEIYGYDLKRHTEIVDSIEHLKYVTKTCG |
Ga0208693_10049483 | F105431 | AGG | MDNDTIIKLIEKYGMHNRGKSKLISYLKGEHITRKEAIYAYCYDCQGYCEDGKVECDQTQCPLYTYSQFNKYNINKSEKE |
Ga0208693_10049487 | F101424 | AGG | MNYIEGLKIIGWIVLIVVCIALLFIWYAAFCYVAYVLLGMIGITGLWQTICGIVLGLFVASLPMSIGHYNKR |
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