Scaffold Ga0208461_1013005

Overview

Basic Information

• Taxon OID: 3300025613
• Scaffold ID: Ga0208461_1013005
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4137
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.65
  • Long. (^o): 135.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045729	Metagenome / Metatranscriptome	152	N
F103316	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208461_10130052	F103316	N/A	MHRIIGLIAAFAVAFFTLPSLTPNPDHISVETKTQTQVTTQELQESPDQSLNKTLSQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKI
Ga0208461_10130054	F045729	N/A	VQVITNKELNSTLLEFLEGLDYFYPATKPLYQLLYDKGFRCIEVNDLQRFTIVSETELRFKPAKNNHYRTFLIEEFPADFIAAIKNNSPKYLSISCNTMRYTFNNLYKYRKVFSGNKEISLHLFRYNFCRKLLDSGESREQIGARLGEIDLSNLDSYLFGDIYRL