Basic Information | |
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Taxon OID | 3300025605 Open in IMG/M |
Scaffold ID | Ga0209720_1015733 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3432 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan | |||||||
Coordinates | Lat. (o) | 36.29 | Long. (o) | 139.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F088944 | Metagenome / Metatranscriptome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209720_10157332 | F088944 | AGGCGG | MKNEEFEKELFEIYLDSLEDRFDFDEDKEKIESLTTEAGEANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPVALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFLLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEGLAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRVLLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIEIEEEEKK |
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