Basic Information | |
---|---|
Taxon OID | 3300025595 Open in IMG/M |
Scaffold ID | Ga0208248_1049782 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 953 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003826 | Metagenome / Metatranscriptome | 466 | Y |
F044497 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208248_10497821 | F003826 | N/A | AGQFSKFFESSDAIHRERTKIKVKGTLLGKTDAELGHEALQIAMHSDALRQAERELKDMIIWQLGKPQIWEQMIAERNRLFKARAEAERAEAERQIAHKKKMADQLMFAMYFVGFGIFLFAAVMVGVGVYGAMEEKRIYEQKVAARNLVLRQQAKEREKKEREERDKAVAGG |
Ga0208248_10497822 | F044497 | N/A | MVVDLILILALAQEPKKDADVKKWPDWECVRWTWSGDVYNRTVICLEWRKKR |
⦗Top⦘ |