Scaffold Ga0208248_1007284

Overview

Basic Information

• Taxon OID: 3300025595
• Scaffold ID: Ga0208248_1007284
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2793
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019602	Metagenome / Metatranscriptome	228	N
F043225	Metagenome / Metatranscriptome	156	Y
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208248_10072842	F043225	AGGA	MNLDLINAELQDVALTQQQEEIDLTYQEFLDTMNAYHDMMMYASYSYDEDAIFYGVN
Ga0208248_10072844	F100405	AGGA	MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDREFAEAYIRT
Ga0208248_10072845	F019602	GGA	MDDRAVIERYILEAWDLGLTGTGVVNYVQYMSSIPVFEIEPVLQNLIARMSE