NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208248_1003421

Scaffold Ga0208248_1003421


Overview

Basic Information
Taxon OID3300025595 Open in IMG/M
Scaffold IDGa0208248_1003421 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4217
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F011761Metagenome / Metatranscriptome287Y
F040626Metagenome161Y
F058142Metagenome / Metatranscriptome135Y
F058146Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208248_10034211F011761N/APTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLDFKATPQNIYYTQTPADGFARVLQLGAMEVIGATNTSGSWTQGFTCNSILDLIRLVKQNFKVARMPGTPVIVLDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQSASRTVVGQASLPVLVGAYFGDSALFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQES
Ga0208248_10034212F002260AGGAMSVPYQRISNATVRDIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAIQVFYESLVTDVSNMNEVDVQNYEFAVKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF
Ga0208248_10034213F058142GGAGMARTISYTVLNQPYTTQEQIIAVIRRDIPSTWNIPVFEDFPSESEKVRYGVYVSDVHQDDRNPHQLGVQYGGSIYHAYDTFSVTYISYQEDPYNQPVNAIIANLVTAVKDDGQQLFDGYFERDFTQVRTYGPTQAERHDWTFRVLRLEFNT
Ga0208248_10034216F058146AGGAMKLNSLTAKPQLVEIEINDDEVINEYGEAITFHTWDRQPLDVFMKLAAADHTNTVGVIGIVRTLILDEKGKEILKDDAMLPTNILMKAIGKVTELLGK
Ga0208248_10034217F040626N/AMALILTIDGLGKRYGMLPSEILKRSNTFDLYIMDAAMTFENYHHKKQMNNGREPMPDYTTDELQNIMDKVKGE

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