Scaffold Ga0208496_1014577

Overview

Basic Information

• Taxon OID: 3300025591
• Scaffold ID: Ga0208496_1014577
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F057099	Metagenome / Metatranscriptome	136	N
F073066	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208496_10145772	F026798	N/A	MNKSKEKPISHNCTEINLKSKKGNDANTDKVINENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKMVNLLDVKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPSNNTLPPYKSVRLENKLLKKGLKKKCSLYPSKEKIIENWYKLMKVQESP
Ga0208496_10145774	F085120	N/A	MKNQARIIQLLNRLENMLKTEIEKARTDQDKDAIKLLDKLYDLVKKTEVNYLA
Ga0208496_10145775	F073066	N/A	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTYFLNKLKELLEKTINRYSE
Ga0208496_10145776	F057099	N/A	MKILRKDWELINKIAWNILHLKLEDSKKTLNLGSSIDTFKLLGILNTPVFVHILISSLCRTINLIRPETSEMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKKEGQNSKLKWLFYHKIPELPDLIEYR