Scaffold Ga0208496_1007361

Overview

Basic Information

• Taxon OID: 3300025591
• Scaffold ID: Ga0208496_1007361
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3326
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011367	Metagenome / Metatranscriptome	291	Y
F016494	Metagenome / Metatranscriptome	246	N
F019949	Metagenome / Metatranscriptome	226	N
F022358	Metagenome / Metatranscriptome	214	N
F039010	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208496_10073611	F022358	N/A	MIAIAITIVVVIVDLEKTCTKMKNPPKTKIELINLEESDEDPFDLVMKCLDESSDSEDYDEDYGEGTSRGIPMFTEASEIISRAHSFIAHEQETLDGKLDEIIYEFEGSSENDMLQYLRKCFEIIDDSIKWANQFLDQAIEKQIDSFTGFYYEMHDDAEIAITKTLTIISLLEEKNFFSLIPVVEDLTSEIDQIKVIVSNTTLEQVEETLKNYASKRSLNRRKIEDFLKI
Ga0208496_10073612	F011367	N/A	MEESENSEVNKMDSHWSKETSEFESRCHNSISHELEILDIILSEMISNIGNSSEDTILLKLRECLGCINDIIIHASQLIDQTQAVEREHPIEFNSLQEGIRINMTKTLTITSKLRERNLLQLLPLVKDLTLDLSEIKILVSRTTLKQIENFLERYRFKKSYIRRKIESFQT
Ga0208496_10073613	F039010	N/A	MEENEDLDASGIDSHRSDDSNEVRCRFHDFMSHEIEILDQILVEMISVAENISENTIISQLKRCFEYIDNMMIYVNQFINQAQSVKMKHFIRFYSLYDGIRHSMMRTLTIINNLRKRNLFQMIPLVKDLTLDLDEIKVLVSRTTLEQVKEVLEGYRIKRSYIRRKIENFI
Ga0208496_10073614	F019949	N/A	MYQEKNRYSKRTLRFADDLLYNNSTAKDEANKEILREELEKSIDKSVVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKIHNLSPLQKARKFSKIYELKQKITQINLNWKISDSFHLKKYKILTLIDKIDVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKIE
Ga0208496_10073616	F016494	N/A	MSQKDNNSEEITIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMMVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQLS