NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209195_1071572

Scaffold Ga0209195_1071572


Overview

Basic Information
Taxon OID3300025590 Open in IMG/M
Scaffold IDGa0209195_1071572 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029115Metagenome / Metatranscriptome189N
F044513Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209195_10715722F029115AGGAGMDTQIEKKIIDFTRLTGLAERITMSHGTLYVTLHQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDEKYSGKEIMDNTEMGIWSEFAEEEMLANIDTALDLENDAKEGR
Ga0209195_10715723F044513AGGAGGMTRNSWIVKQIYTDAKNNLGWLFKGVLVAGGFIAGIKLLMFFSVPKEIVFPVMWIAFILVMLYKWYSMK

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